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1.
Braz. J. Pharm. Sci. (Online) ; 59: e22076, 2023. tab, graf
Artigo em Inglês | LILACS | ID: biblio-1439496

RESUMO

Abstract Bauhinia forficata Link aqueous extract is usually recommended as a phytomedicine to reduce blood glucose levels and its biological activity has been linked to the presence of phenolic compounds from B. forficata preparations. Several drying processes are used in the production of dry herbal extracts, which may influence the chemical composition and efficacy of final herbal medicines. Due to significant chemical changes, defining appropriate drying processes is essential for phytopharmaceutical drug development. In view of this, we analyzed dried B. forficata leaf infusion (BFLI) extracts by HPLC-UV-MSn, followed by molecular networking analysis to evaluate the chemical profiles from dried extracts yielded by freeze-and spray-drying processes. The main metabolites detected included 11 ferulic/isoferulic acid derivatives and 13 glycosylated flavonoids. The qualitative chemical profiles were alike for both drying processes, whereas the relative abundance of some flavonoids was higher using spray-drying. Taken together, our results showed that freeze-and spray-drying preserved the phenolic profile of BFLI and suggested that spray-drying may be the most suitable to obtain its dried products. Along with studying the chemical profiles of dried herbal extracts, evaluating the influence of drying processes on the quality and chemical profiles of final products is pivotal and may benefit future research.


Assuntos
Folhas de Planta/classificação , Bauhinia/efeitos adversos , Compostos Fenólicos , Fabaceae/classificação , Flavonoides/agonistas , Cromatografia Líquida de Alta Pressão/métodos , Gestão da Qualidade Total/organização & administração , Medicina Herbária/tendências , Desenvolvimento de Medicamentos/instrumentação
2.
Braz. J. Pharm. Sci. (Online) ; 58: e20577, 2022. graf
Artigo em Inglês | LILACS | ID: biblio-1403738

RESUMO

Abstract Lysiphyllum strychnifolium (Craib) A. Schmitz. (in Thai name, Ya nang daeng) has been traditionally used to treat fever, alcohol intoxication, cancer, allergies, and blood toxins. It can be used as a health-promoting herbal tea and contains hydroalcoholic extracts. The purpose of the present study was to develop a microwave-assisted extraction method for astilbin in L. strychnifolium stems. HPLC was used to determine astilbin content. Three extraction conditions were optimized: types of solvent, microwave power levels, and the number of extraction cycles. Water:methanol (40:60) was the best solvent for astilbin extraction from L. strychnifolium stems using 450 watts and six microwave-assisted extraction cycles. This technique offers important advantages over conventional methods, such as shorter extraction times, substantial energy savings, and a reduced environmental burden.


Assuntos
Caules de Planta/classificação , Fabaceae/classificação , Micro-Ondas/efeitos adversos , Cromatografia Líquida de Alta Pressão/métodos
3.
J Agric Food Chem ; 68(47): 13486-13496, 2020 Nov 25.
Artigo em Inglês | MEDLINE | ID: mdl-33169614

RESUMO

Legumes are an excellent source of nutrients and phytochemicals. They have been recognized for their contributions to health, sustainability, and the economy. Although legumes comprise several species and varieties, little is known about the differences in their phytochemical composition and the magnitude of these. Therefore, the aim of this review is to describe and compare the qualitative profile of phytochemicals contained in legumes and identified through LC-MS and GC-MS methods. Among the 478 phytochemicals reported in 52 varieties of legumes, phenolic compounds were by far the most frequently described (n = 405, 85%). Metabolomics data analysis tools were used to visualize the qualitative differences, showing beans to be the most widely analyzed legumes and those with the highest number of discriminant phytochemicals (n = 180, 38%). A Venn diagram showed that lentils, beans, soybeans, and chickpeas shared only 7% of their compounds. This work highlighted the huge chemical diversity among legumes and identified the need for further research in this field and the use of metabolomics as a promising tool to achieve it.


Assuntos
Fabaceae/química , Compostos Fitoquímicos/química , Extratos Vegetais/química , Cromatografia Líquida de Alta Pressão , Fabaceae/classificação , Espectrometria de Massas
4.
Sci Rep ; 10(1): 15158, 2020 09 16.
Artigo em Inglês | MEDLINE | ID: mdl-32938966

RESUMO

The combination of pyrimethamine and sulfadiazine is the standard care in cases of congenital toxoplasmosis. However, therapy with these drugs is associated with severe and sometimes life-threatening side effects. The investigation of phytotherapeutic alternatives to treat parasitic diseases without acute toxicity is essential for the advancement of current therapeutic practices. The present study investigates the antiparasitic effects of oleoresins from different species of Copaifera genus against T. gondii. Oleoresins from C. reticulata, C. duckei, C. paupera, and C. pubiflora were used to treat human trophoblastic cells (BeWo cells) and human villous explants infected with T. gondii. Our results demonstrated that oleoresins were able to reduce T. gondii intracellular proliferation, adhesion, and invasion. We observed an irreversible concentration-dependent antiparasitic action in infected BeWo cells, as well as parasite cell cycle arrest in the S/M phase. The oleoresins altered the host cell environment by modulation of ROS, IL-6, and MIF production in BeWo cells. Also, Copaifera oleoresins reduced parasite replication and TNF-α release in villous explants. Anti-T. gondii effects triggered by the oleoresins are associated with immunomodulation of the host cells, as well as, direct action on parasites.


Assuntos
Antiprotozoários/farmacologia , Fabaceae/química , Extratos Vegetais/farmacologia , Complicações Parasitárias na Gravidez/tratamento farmacológico , Toxoplasmose/complicações , Toxoplasmose/tratamento farmacológico , Animais , Antiprotozoários/administração & dosagem , Antiprotozoários/isolamento & purificação , Pontos de Checagem do Ciclo Celular/efeitos dos fármacos , Linhagem Celular , Citocinas/metabolismo , Relação Dose-Resposta a Droga , Fabaceae/classificação , Feminino , Interações Hospedeiro-Parasita/efeitos dos fármacos , Humanos , Microscopia Eletrônica de Transmissão , Fitoterapia , Placenta/efeitos dos fármacos , Placenta/parasitologia , Extratos Vegetais/administração & dosagem , Extratos Vegetais/isolamento & purificação , Gravidez , Complicações Parasitárias na Gravidez/parasitologia , Espécies Reativas de Oxigênio/metabolismo , Toxoplasma/citologia , Toxoplasma/efeitos dos fármacos , Toxoplasma/patogenicidade , Toxoplasmose/parasitologia , Trofoblastos/efeitos dos fármacos , Trofoblastos/parasitologia
5.
New Phytol ; 225(3): 1355-1369, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31665814

RESUMO

Phylogenomics is increasingly used to infer deep-branching relationships while revealing the complexity of evolutionary processes such as incomplete lineage sorting, hybridization/introgression and polyploidization. We investigate the deep-branching relationships among subfamilies of the Leguminosae (or Fabaceae), the third largest angiosperm family. Despite their ecological and economic importance, a robust phylogenetic framework for legumes based on genome-scale sequence data is lacking. We generated alignments of 72 chloroplast genes and 7621 homologous nuclear-encoded proteins, for 157 and 76 taxa, respectively. We analysed these with maximum likelihood, Bayesian inference, and a multispecies coalescent summary method, and evaluated support for alternative topologies across gene trees. We resolve the deepest divergences in the legume phylogeny despite lack of phylogenetic signal across all chloroplast genes and the majority of nuclear genes. Strongly supported conflict in the remainder of nuclear genes is suggestive of incomplete lineage sorting. All six subfamilies originated nearly simultaneously, suggesting that the prevailing view of some subfamilies as 'basal' or 'early-diverging' with respect to others should be abandoned, which has important implications for understanding the evolution of legume diversity and traits. Our study highlights the limits of phylogenetic resolution in relation to rapid successive speciation.


Assuntos
Evolução Molecular , Fabaceae/classificação , Fabaceae/genética , Variação Genética , Genômica , Filogenia , Sequência de Bases , Teorema de Bayes , Genes de Cloroplastos , Funções Verossimilhança , Especificidade da Espécie
6.
Crit Rev Food Sci Nutr ; 59(sup1): S178-S188, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30632774

RESUMO

This review concerns three legume trees (family Fabaceae, subfamily Caesalpinioideae) from West Africa, namely Detarium microcarpum, Parkia biglobosa and Dialium guineense, and illustrates their nutritional value and therapeutic properties. These species are an important source of nutrition for West African populations, but their agricultural exploitation is still incomplete. The survey was conducted on Scopus, Web of Science, and Medline, using scientific and common English names of the species as keywords and then selecting papers related to nutritional and medicinal properties. Main food products are fruit pulp and seeds, though leaves can also be used. Most relevant dietary features are high protein, vitamin, and micronutrient contents. Various therapeutic and nutritional benefits of these plants have been documented by ethnobotanical and experimental studies, stimulating an interest for their possible use as functional food or drug sources. Most studied medicinal properties include antidiabetic and antimicrobial activities of D. microcarpum, cardiovascular protective and antidiabetic activities of P. biglobosa, and bilharzia-preventing molluscicidal activity of D. guineense. Phytochemical characterizations have revealed potential sources of active drugs, such as D. guineense saponins and D. microcarpum diterpenes. Scientific results support popular uses of these legume trees, indicating a prominent nutritional and health value.


Assuntos
Etnofarmacologia , Fabaceae/química , Compostos Fitoquímicos/uso terapêutico , Extratos Vegetais/uso terapêutico , Árvores/química , África Ocidental , Anti-Infecciosos , Antineoplásicos , Antioxidantes , Bases de Dados Factuais , Dieta , Etnobotânica , Fabaceae/classificação , Frutas/química , Humanos , Hipoglicemiantes , Valor Nutritivo , Fitoterapia , Folhas de Planta/química , Sementes/química
7.
J Ethnopharmacol ; 219: 319-336, 2018 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-29501844

RESUMO

ETHNOPHARMACOLOGICAL RELEVANCE: The World Health Organization (WHO) recognizes the potential of plants used in secular traditional medicine and considers this an important source of evidence to assess their effectiveness and safety. Brazil is rich in biodiversity and traditional uses based on the Amerindian culture. However, many processes started with the arrival of the Portuguese in the year 1500. The successive economic cycles, for example, led to destruction of native vegetation and an intense cultural erosion. As a consequence, the information about the use of plants in the past centuries are dispersed and without interpretation. In this study a methodology to evidence the traditionality of Brazilian plants was demonstrated using data about barbatimão barks (Stryphnodendron adstringens (Mart.) Coville - Fabaceae) and Copaiba oleoresin (Copaifera spp. - Fabaceae) in wound healing, was established. MATERIAL AND METHODS: Data about use of the plants were recovered from bibliography published between 1576 and 2011. The books (101) were classified using weights, considering the date of publication and the source of Information. Older books that describe primary information received weight 10, while books written more recently and with secondary information received weight 0.4. A score for each category of medicinal use was calculated based on the books weights and the frequency of citation. A review about the current use of both plants was also performed from ethnobotanical studies published in journals. RESULTS AND DISCUSSION: The traditional secular use of barks of barbatimão and oleoresin of copaiba to treat wounds was confirmed based on the historic bibliographic research. The most frequent use of barbatimão in a timeline of 500 years of Brazil's history, was as astringent, whereas for copaíba was as healing of skin and mucosal lesions. The continuous and current use of these plants to treat wounds, confirmed by recent ethnobotanical studies, is an indicative of the resilience of these remedies and their effectiveness. CONCLUSION: The use of preparations containing barbatimão barks and copaiba oleoresin can be considered effective in the treatment of wounds. Nonetheless, it is necessary to improve the quality of the formulas as established by WHO.


Assuntos
Fabaceae/classificação , Medicina Tradicional/métodos , Casca de Planta , Preparações de Plantas/classificação , Obras Médicas de Referência , Cicatrização/efeitos dos fármacos , Analgésicos/classificação , Analgésicos/farmacologia , Analgésicos/uso terapêutico , Anti-Inflamatórios/classificação , Anti-Inflamatórios/farmacologia , Anti-Inflamatórios/uso terapêutico , Adstringentes/classificação , Adstringentes/farmacologia , Adstringentes/uso terapêutico , Brasil/etnologia , Humanos , Casca de Planta/classificação , Preparações de Plantas/farmacologia , Preparações de Plantas/uso terapêutico , Plantas Medicinais/classificação , Resinas Vegetais/classificação , Resinas Vegetais/farmacologia , Resinas Vegetais/uso terapêutico
8.
Nutrients ; 10(1)2018 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-29316699

RESUMO

Registered Dietitians (RDs) promote nutrition practices and policies and can influence food consumption patterns to include nutrient dense foods such as beans. Although many evidence-based health benefits of bean consumption (e.g., cholesterol reduction, glycemic control) have been demonstrated, there is limited research on the knowledge, attitudes, and perceptions of RDs regarding the inclusion of beans in a healthy diet. To fill this existing research gap, this cross-sectional survey explored the perceptions, knowledge, and attitudes of 296 RDs in Arizona, USA, toward beans. The RDs largely held positive attitudes toward the healthfulness of beans and were aware of many health benefits. Some gaps in awareness were evident, including effect on cancer risk, intestinal health benefits, folate content, and application with celiac disease patients. RDs with greater personal bean consumption had significantly higher bean health benefit knowledge. Twenty-nine percent of the RDs did not know the meaning of 'legume', and over two-thirds could not define the term 'pulse'. It is essential that RDs have up-to-date, evidence-based information regarding bean benefits to provide appropriate education to patients, clients, and the public.


Assuntos
Atitude do Pessoal de Saúde , Dieta Saudável , Fabaceae , Conhecimentos, Atitudes e Prática em Saúde , Nutricionistas/psicologia , Valor Nutritivo , Adulto , Arizona , Estudos Transversais , Fabaceae/classificação , Humanos , Masculino , Pessoa de Meia-Idade , Percepção , Recomendações Nutricionais , Inquéritos e Questionários , Terminologia como Assunto
9.
An Acad Bras Cienc ; 89(4): 3039-3050, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29267801

RESUMO

The aim of this study was to evaluate gas exchange, efficiency of the photosynthetic apparatus, and antioxidant activity in Copaifera langsdorffii Desf. The seedlings were cultivated under different conditions of water availability, in order to improve the utilization efficiency of available water resources. The seedlings were cultivated in four different water retention capacities (WRC- 25%, 50%, 75%, and 100%), and evaluated at four different time (T- 30, 60, 90, and 120 days). During the experimental period, seedlings presented the highest values for carboxylation efficiency of Rubisco (A/Ci), intrinsic water use efficiency (IWUE = A/gs), chlorophyll index, and stomatal opening, when grown in the substrate with 75% WRC, but the stomatal index (SI) was less the 25% WRC. The efficiency of photosystem II was not significantly altered by the treatments. Comparison between the extreme treatments in terms of water availability, represented by 25% and 100% WRC, represent stress conditions for the species. Water availability causes a high activity of antioxidant enzymes (superoxide dismutase, peroxidase, and catalase) in the plant.


Assuntos
Antioxidantes/metabolismo , Fabaceae/metabolismo , Plântula/metabolismo , Água/metabolismo , Dióxido de Carbono/metabolismo , Clorofila/metabolismo , Fabaceae/classificação , Fabaceae/fisiologia , Estômatos de Plantas/metabolismo , Distribuição Aleatória , Fatores de Tempo
10.
An. acad. bras. ciênc ; 89(4): 3039-3050, Oct.-Dec. 2017. graf
Artigo em Inglês | LILACS | ID: biblio-886844

RESUMO

ABSTRACT The aim of this study was to evaluate gas exchange, efficiency of the photosynthetic apparatus, and antioxidant activity in Copaifera langsdorffii Desf. The seedlings were cultivated under different conditions of water availability, in order to improve the utilization efficiency of available water resources. The seedlings were cultivated in four different water retention capacities (WRC- 25%, 50%, 75%, and 100%), and evaluated at four different time (T- 30, 60, 90, and 120 days). During the experimental period, seedlings presented the highest values for carboxylation efficiency of Rubisco (A/Ci), intrinsic water use efficiency (IWUE = A/gs), chlorophyll index, and stomatal opening, when grown in the substrate with 75% WRC, but the stomatal index (SI) was less the 25% WRC. The efficiency of photosystem II was not significantly altered by the treatments. Comparison between the extreme treatments in terms of water availability, represented by 25% and 100% WRC, represent stress conditions for the species. Water availability causes a high activity of antioxidant enzymes (superoxide dismutase, peroxidase, and catalase) in the plant.


Assuntos
Água/metabolismo , Plântula/metabolismo , Fabaceae/metabolismo , Antioxidantes/metabolismo , Fatores de Tempo , Dióxido de Carbono/metabolismo , Distribuição Aleatória , Clorofila/metabolismo , Estômatos de Plantas/metabolismo , Fabaceae/classificação , Fabaceae/fisiologia
11.
An. acad. bras. ciênc ; 89(3): 1369-1379, July-Sept. 2017. tab, graf
Artigo em Inglês | LILACS | ID: biblio-886755

RESUMO

ABSTRACT Natural steroids and triterpenes such as b-sitosterol, stigmasterol, lupeol, ursolic and betulinic acids were transformed into its hexanoic and oleic esters, to evaluate the influence of chemical modification towards the cytotoxic activities against tumor cells. The derivatives were evaluated against five tumor cell lines [OVCAR-8 (ovarian carcinoma); SF-295 (glioblastoma); HCT-116 (colon adenocarcinoma); HL-60 (leukemia); and PC-3 (prostate carcinoma)] and the results showed only betulinic acid hexyl ester exhibits cytotoxic potential activity.


Assuntos
Humanos , Triterpenos/farmacologia , Lamiaceae/química , Triterpenos Pentacíclicos/farmacologia , Fabaceae/química , Antineoplásicos/farmacologia , Triterpenos/isolamento & purificação , Triterpenos/química , Ensaios de Seleção de Medicamentos Antitumorais , Lamiaceae/classificação , Concentração Inibidora 50 , Linhagem Celular Tumoral , Ésteres , Triterpenos Pentacíclicos/isolamento & purificação , Triterpenos Pentacíclicos/química , Fabaceae/classificação , Antineoplásicos/isolamento & purificação , Antineoplásicos/química
12.
An. acad. bras. ciênc ; 89(3): 1761-1771, July-Sept. 2017. tab, graf
Artigo em Inglês | LILACS | ID: biblio-886729

RESUMO

ABSTRACT Amazonia is crucial to global carbon cycle. Deforestation continues to be one of the main causes of the release of C into the atmosphere, but forest restoration plantations can reverse this scenario. However, there is still diffuse information about the C and nutrient stocks in the vegetation biomass. We investigated the carbon and nutrient stocks of Fabaceae trees (Inga edulis, Schizolobium amazonicum and Dipteryx odorata) subjected to fertilization treatments (T1 - no fertilization; T2 - chemical; T3 - organic; and T4 - organic and chemical fertilization) in a degraded area of the Balbina Hydroelectric Dam, AM - Brazil. As an early successional species, I. edulis stocked more C and nutrients than the other two species independent of the fertilization treatment, and S. amazonicum stocked more C than D. odorata under T1 and T4. The mixed species plantation had the potential to stock 4.1 Mg C ha-1 year-1, while I. edulis alone could stock 9.4 Mg C ha-1 year-1. Mixing species that rapidly assimilate C and are of significant ecological and commercial value (e.g., Fabaceae trees) represents a good way to restore degraded areas. Our results suggest that the tested species be used for forest restoration in Amazonia.


Assuntos
Reguladores de Crescimento de Plantas/farmacologia , Carbono/análise , Florestas , Conservação dos Recursos Naturais , Fabaceae/classificação , Fabaceae/efeitos dos fármacos , Solo , Brasil , Biomassa , Fabaceae/química
13.
An Acad Bras Cienc ; 89(3): 1369-1379, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28813102

RESUMO

Natural steroids and triterpenes such as b-sitosterol, stigmasterol, lupeol, ursolic and betulinic acids were transformed into its hexanoic and oleic esters, to evaluate the influence of chemical modification towards the cytotoxic activities against tumor cells. The derivatives were evaluated against five tumor cell lines [OVCAR-8 (ovarian carcinoma); SF-295 (glioblastoma); HCT-116 (colon adenocarcinoma); HL-60 (leukemia); and PC-3 (prostate carcinoma)] and the results showed only betulinic acid hexyl ester exhibits cytotoxic potential activity.


Assuntos
Antineoplásicos/farmacologia , Fabaceae/química , Lamiaceae/química , Triterpenos Pentacíclicos/farmacologia , Triterpenos/farmacologia , Antineoplásicos/química , Antineoplásicos/isolamento & purificação , Linhagem Celular Tumoral , Ensaios de Seleção de Medicamentos Antitumorais , Ésteres , Fabaceae/classificação , Humanos , Concentração Inibidora 50 , Lamiaceae/classificação , Triterpenos Pentacíclicos/química , Triterpenos Pentacíclicos/isolamento & purificação , Triterpenos/química , Triterpenos/isolamento & purificação , Ácido Betulínico , Ácido Ursólico
14.
Arq. gastroenterol ; 54(2): 135-138, Apr.-June 2017. tab, graf
Artigo em Inglês | LILACS | ID: biblio-838830

RESUMO

ABSTRACT BACKGROUND Given the increase of people with gastrointestinal disorders, the search for alternative treatments with fewer side effects is vital, as well as the demand for food or plants that can help protect the stomach. OBJECTIVE The aim of this study was to evaluate the gastroprotective action of the extracts of wild fruit trees of Myrcianthes pungens (guabiju); Inga vera Willd. (ingá-banana) and Marlierea tomentosa Cambess. (guarapuruna) in in vivo pharmacological models. METHODS The different parts of the fruits were separately subjected to a process of extraction by methanol. Two experimental pharmacological models were conducted in mice; the gastric ulcer model induced by non-steroidal anti-inflammatory (indomethacin), and the gastric ulcer model induced by ethanol/HCl, which allowed us to evaluate the gastroprotective activity of the extracts at a dose of 250 mg/kg. Subsequently, the total lesion area (mm2) and relative lesion area (%) were determined. RESULTS The results showed significant gastroprotective activity against the aggressive agents used - ethanol and indomethacin - for all the extracts tested. CONCLUSION It is assumed that the fruits have bioactive compounds such as antioxidant substances that act on the prostaglandin levels, protecting them from the damage caused by ethanol and indomethacin. These results prompt further studies to isolate and identify the active properties.


RESUMO CONTEXTO Devido ao aumento de pessoas com distúrbios gastrointestinais, a busca de tratamentos alternativos com menos efeitos cola­terais é fundamental, assim como a demanda por alimentos ou plantas que possam ajudar a proteger o estômago. OBJETIVO O presente estudo teve como objetivo avaliar a ação gastroprotetora dos extratos plantas frutíferas silvestres Myrcianthes pungens (guabiju); Inga vera Willd. (ingá-banana) e Marlierea tomentosa Cambess. (guarapuruna) em modelos farmacológicos in vivo. MÉTODOS As diferentes partes do fruto foram submetidas se­paradamente a um processo de maceração em solução metanólica a frio. Foram realizados dois modelos experimentais em camundongos, modelo de úlcera gástrica induzida por anti-inflamatório não-esteroidal (indometacina) e modelo de úlcera gástrica induzida por etanol/HCl, que permitiram avaliar a atividade gastroprotetora dos extratos na dose de 250 mg/kg. Posteriormente, foram determinadas a área total de lesão (mm2) e a área relativa lesada (%). RESULTADOS Os resultados apresentaram atividade gastroprotetora significativa para todos os extratos estudados frente aos agentes agressores utilizados, etanol e indometacina. CONCLUSÃO Supõe-se que os frutos apresentam compostos bioativos, como as substancias antioxidantes, que atuam sobre os níveis de prostaglandinas, protegendo dos danos causados pelo etanol e indometacina. Os resultados encorajam futuros estudos para isolamento e identificação dos princípios ativos dos frutos.


Assuntos
Animais , Masculino , Camundongos , Úlcera Gástrica/prevenção & controle , Extratos Vegetais/farmacologia , Substâncias Protetoras/farmacologia , Myrtaceae/química , Frutas/química , Fabaceae/química , Úlcera Gástrica/induzido quimicamente , Indometacina , Myrtaceae/classificação , Modelos Animais de Doenças , Etanol , Frutas/classificação , Mucosa Gástrica/efeitos dos fármacos , Fabaceae/classificação
15.
BMC Bioinformatics ; 18(1): 170, 2017 Mar 14.
Artigo em Inglês | MEDLINE | ID: mdl-28292266

RESUMO

BACKGROUND: Post-transcriptional gene dysregulation can be a hallmark of diseases like cancer and microRNAs (miRNAs) play a key role in the modulation of translation efficiency. Known pre-miRNAs are listed in miRBase, and they have been discovered in a variety of organisms ranging from viruses and microbes to eukaryotic organisms. The computational detection of pre-miRNAs is of great interest, and such approaches usually employ machine learning to discriminate between miRNAs and other sequences. Many features have been proposed describing pre-miRNAs, and we have previously introduced the use of sequence motifs and k-mers as useful ones. There have been reports of xeno-miRNAs detected via next generation sequencing. However, they may be contaminations and to aid that important decision-making process, we aimed to establish a means to differentiate pre-miRNAs from different species. RESULTS: To achieve distinction into species, we used one species' pre-miRNAs as the positive and another species' pre-miRNAs as the negative training and test data for the establishment of machine learned models based on sequence motifs and k-mers as features. This approach resulted in higher accuracy values between distantly related species while species with closer relation produced lower accuracy values. CONCLUSIONS: We were able to differentiate among species with increasing success when the evolutionary distance increases. This conclusion is supported by previous reports of fast evolutionary changes in miRNAs since even in relatively closely related species a fairly good discrimination was possible.


Assuntos
MicroRNAs/metabolismo , Animais , Sequência de Bases , Fabaceae/classificação , Fabaceae/genética , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , MicroRNAs/química , MicroRNAs/genética , Filogenia , Precursores de RNA/genética , Precursores de RNA/metabolismo
16.
Plant Physiol ; 174(1): 284-300, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28325848

RESUMO

Mainly due to their economic importance, genomes of 10 legumes, including soybean (Glycine max), wild peanut (Arachis duranensis and Arachis ipaensis), and barrel medic (Medicago truncatula), have been sequenced. However, a family-level comparative genomics analysis has been unavailable. With grape (Vitis vinifera) and selected legume genomes as outgroups, we managed to perform a hierarchical and event-related alignment of these genomes and deconvoluted layers of homologous regions produced by ancestral polyploidizations or speciations. Consequently, we illustrated genomic fractionation characterized by widespread gene losses after the polyploidizations. Notably, high similarity in gene retention between recently duplicated chromosomes in soybean supported the likely autopolyploidy nature of its tetraploid ancestor. Moreover, although most gene losses were nearly random, largely but not fully described by geometric distribution, we showed that polyploidization contributed divergently to the copy number variation of important gene families. Besides, we showed significantly divergent evolutionary levels among legumes and, by performing synonymous nucleotide substitutions at synonymous sites correction, redated major evolutionary events during their expansion. This effort laid a solid foundation for further genomics exploration in the legume research community and beyond. We describe only a tiny fraction of legume comparative genomics analysis that we performed; more information was stored in the newly constructed Legume Comparative Genomics Research Platform (www.legumegrp.org).


Assuntos
Fabaceae/genética , Genoma de Planta/genética , Genômica/métodos , Filogenia , Mapeamento Cromossômico , Evolução Molecular , Fabaceae/classificação , Duplicação Gênica , Genes de Plantas/genética , Modelos Genéticos , Poliploidia , Especificidade da Espécie
17.
Mol Phylogenet Evol ; 107: 270-281, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27825871

RESUMO

Polyploidy has rarely been documented in rain forest trees but it has recently been found in African species of the genus Afzelia (Leguminosae), which is composed of four tetraploid rain forest species and two diploid dry forest species. The genus Afzelia thus provides an opportunity to examine how and when polyploidy and habitat shift occurred in Africa, and whether they are associated. In this study, we combined three plastid markers (psbA, trnL, ndhF), two nuclear markers (ribosomal ITS and the single-copy PEPC E7 gene), plastomes (obtained by High Throughput Sequencing) and morphological traits, with an extensive taxonomic and geographic sampling to explore the evolutionary history of Afzelia. Both nuclear DNA and morphological vegetative characters separated diploid from tetraploid lineages. Although the two African diploid species were well differentiated genetically and morphologically, the relationships among the tetraploid species were not resolved. In contrast to the nuclear markers, plastid markers revealed that one of the diploid species forms a well-supported clade with the tetraploids, suggesting historical hybridisation, possibly in relation with genome duplication (polyploidization) and habitat shift from dry to rain forests. Molecular dating based on fossil-anchored gene phylogenies indicates that extant Afzelia started diverging c. 14.5 or 20Ma while extant tetraploid species started diverging c. 7.0 or 9.4Ma according to plastid and nuclear DNA, respectively. Additional studies of tropical polyploid plants are needed to assess whether the ploidy-habitat association observed in African Afzelia would reflect a role of polyploidization in niche divergence in the tropics.


Assuntos
Evolução Biológica , Ecossistema , Fabaceae/classificação , Fabaceae/genética , Poliploidia , Árvores/classificação , África , DNA de Plantas/genética , Geografia , Filogenia , Polimorfismo Genético , Análise de Sequência de DNA , Especificidade da Espécie , Fatores de Tempo
18.
Food Chem Toxicol ; 108(Pt B): 467-477, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27613272

RESUMO

Detailed characterization in nutrients and phytochemicals with antioxidant activities of 26 kidney beans was performed. The kidney beans contained high levels of dietary fiber (29.32-46.77%), resistant starch (9.16-18.09%) and protein (22.06-32.63%) but low levels of lipid (1.05-2.83%) and sugars (1.55-9.07%). The monosaccharide composition of soluble fiber was dominated by arabinose, galactose, mannose and galacturonic acid. The ratio of essential amino acid to the total amino acid was ranged from 0.29 to 0.36. The predominant fatty acid was polyunsaturated fatty acids, accounting for 47.54-67.26% of total fatty acids. The total tocopherol content was in the range of 12.83-68.35 µg/g, predominantly γ-tocopherol, followed by δ-tocopherol. In addition, certain levels of total phenolics and flavonoids with respective values of 0.25-3.79 mg gallic acid equivalent/g dry weight and 0.19-7.05 mg rutin equivalent/g dry weight resulted in significant antioxidant activities. And a good correlation was observed between TPC and FRAP values (R2 = 0.8030). The results indicated that kidney beans are excellent sources of health-promoting compounds.


Assuntos
Antioxidantes/metabolismo , Fabaceae/química , Fabaceae/classificação , Compostos Fitoquímicos/metabolismo , Antioxidantes/química , Antioxidantes/farmacologia , Compostos de Bifenilo , Fibras na Dieta/análise , Ácidos Graxos/química , Monossacarídeos/química , Valor Nutritivo , Oxirredução , Compostos Fitoquímicos/química , Picratos , Tocoferóis
19.
Rev. biol. trop ; 64(2): 483-492, abr.-jun. 2016. tab, ilus
Artigo em Inglês | LILACS | ID: biblio-843292

RESUMO

AbstractHeterogeneity in seeds mostly occurs due to physiological, environmental and genetic factors, and these could affect seed dormancy and germination. Therefore, the aim of our study was to assess the effect of seed colour on germination behavior. For this, both light and temperature requirements were assessed in Lotus glinoides and Lotus halophilus (Fabaceae) from the hyper-arid deserts of the United Arab Emirates. Germination was assessed in terms of both final germination level (percentage) and germination rate, as expressed by Timson’s germination velocity index. Lotus glinoides produces black and yellow-colored seeds, and L. halophilus produces green and yellow seeds. Different seed lots were germinated in both light and darkness at different temperatures. Yellow seeds of the two species attained significantly lower germination, compared to black and green seeds. There was no specific light or temperature requirements for the germination of the two coloured seeds of L. glinoides; the effect of interactions between seed colour and both light and incubation temperature, were not significant on the final germination percentage. in L. halophilus, green seeds germinated significantly more in both light and darkness at lower temperatures (15/25 °C) and in light at higher temperatures (25/35 °C), compared to yellow seeds. Yellow seeds germinated faster, compared to black at 15/25 °C in L. glinoides and compared to green seeds at 15/25 °C and 25/35 °C in L. halophilus. Seed colour variation, at least in L. halophilus, could be a survival strategy that would determine the time of germination throughout the year in the unpredictable desert environment. Rev. Biol. Trop. 64 (2): 483-492. Epub 2016 June 01.


ResumenLa heterogeneidad en las semillas se produce principalmente debido a factores fisiológicos, genéticos y ambientales, y esto podría afectar latencia de las semillas y la germinación. Por lo tanto, el objetivo de nuestro estudio fue evaluar el efecto del color de la semilla en el comportamiento de la germinación. Para ello, tanto los requisitos de luz y temperatura fueron evaluados en Lotus glinoides y Lotus halophilus (Fabaceae) desde los desiertos hiper-árida de los Emiratos Árabes Unidos. La germinación se evaluó en términos de nivel final de germinación (porcentaje) y la tasa de germinación, expresado por el índice de velocidad de germinación de Timson. L. glinoides produce semillas negro y de color amarillo, y L. halophilus produce semillas verdes y amarillas. Los diferentes lotes de semillas fueron germinadas en luz y oscuridad a diferentes temperaturas. Semillas amarillas de las dos especies alcanzaron significativamente menor germinación, en comparación con las semillas negras y verdes. No había requisitos específicos de luz o temperatura para la germinación de las semillas de dos colores de L. glinoides; el efecto de las interacciones entre color de la semilla y la luz y la temperatura de incubación, no fueron significativas en el porcentaje final de germinación. En L. halophilus, semillas verdes germinados significativamente más en la luz y la oscuridad a temperaturas más bajas (15/25 °C) ya la luz a temperaturas más altas (25/35 °C), en comparación con semillas amarillas. Semillas amarillas germinaron más rápido, en comparación con el negro a 15/25 °C en L. glinoides y en comparación con semillas verdes a 15/25 °C y 25/35 °C en L. halophilus. La variación del color de la semilla, al menos en L. halophilus, podría ser una estrategia de supervivencia que determinaría el momento de la germinación durante todo el año en el entorno del desierto impredecible.


Assuntos
Sementes/anatomia & histologia , Sementes/crescimento & desenvolvimento , Fabaceae/crescimento & desenvolvimento , Temperatura , Cor , Germinação/fisiologia , Clima Desértico , Dormência de Plantas , Fabaceae/classificação
20.
Rev. bras. plantas med ; 18(1,supl.1): 279-287, 2016. tab, graf
Artigo em Português | LILACS | ID: lil-782988

RESUMO

RESUMO A espécie Phaseolus lunatus L., conhecida popularmente como feijão-fava constitui uma das alternativas de renda e alimentação para a população da região Nordeste do Brasil. Um dos problemas enfrentados são as doenças que provocam grandes perdas na produção de sementes. O presente trabalho objetivou avaliar a eficiência dos óleos essenciais de copaíba, cravo-da-índia e manjericão na redução da incidência de fungos associados às sementes de feijão-fava, e sua interferência na qualidade fisiológica. Os tratamentos foram constituídos por óleos essenciais de copaíba, cravo-da-índia e manjericão nas concentrações de 0; 1; 1,5 e 2 mL. L-1 e fungicida (Captan®). Foram utilizadas 200 sementes por tratamento. Para análise da qualidade sanitária das sementes foi adotado o método de incubação em placas de Petri contendo dupla camada de papel-filtro umedecida com ADE, sob temperatura de 20 ±2 ºC, por 7 dias. A qualidade fisiológica das sementes foi determinada com base nos testes de germinação, emergência e vigor das sementes. Para o teste germinação foi empregado método de rolo de papel germitest e na emergência osemeio foi realizado em bandejas plásticas contendo areia lavada esterilizada, em condição de casa de vegetação, e após 9 dias da instalação foi determinado o vigor com base nos resultados de índice de velocidade de germinação e emergência; comprimento da parte aérea, raiz primária e plântula; e teor de massa seca da partes aérea, raízes e plântulas de feijão-fava. O delineamento experimental foi interiamente casualizados, em esquama de fatorial simples (3x4)+1 (óleos essenciais x concentrações + fungicida), com quatro repetições de 50 sementes. Os óleos essenciais de copaíba e manjericão reduziram consideravelmente o percentual de incidência dos fungos associados as sementes de feijão-fava. O óleo essencial de cravo-da-índia na concetração de 2 mL. L-1, reduziu a qualidade fisiológica das sementes de feijão-fava.


ABSTRACT The Phaseolus lunatus L. species, popularly known as lima bean, is one of the alternative sources of income and food for the population of Northeast Brazil. One of the problems is the diseases that cause great losses in seed production. This study evaluated the effectiveness of essential oils of copaiba, clove, and basil in reducing the incidence of fungi associated with lima bean seeds, as well as the effect on their physiological quality. The treatments consisted of essential oils of copaiba, clove, and basil at concentrations of 0; 1; 1.5; and 2 mL. L-1 and fungicide (Captan®). A total of 200 seeds were used per treatment. To analyze the sanitary quality of the seeds, the method used was incubation in petri dishes containing a double layer of filter paper moistened with distilled sterilized water at a temperature of 20 ± 2°C, for seven days. The physiological quality of the seeds was determined by testing their germination, emergence, and vigor. For the germination test, the method used was a roll of Germitest paper. For the emergence, the seeds were sown in plastic trays containing washed sterilized sand in greenhouse conditions. After nine days, the vigor was determined based on the results of germination and emergence speed rates; length of the aerial part, primary root, and seedling; and dry matter content of the aerial part, roots, and seedlings of the lima beans. The experimental design was completely randomized in a simple factorial arrangement (3x4)+1 (essential oils x concentrations + fungicide) with four replications of 50 seeds. The essential oils of copaiba and basil considerably reduced the percentage of incidence of the fungi associated with lima bean seeds. The essential clove oil at 2 mL. L-1 reduced the physiological quality of the lima bean seeds.


Assuntos
Sementes/classificação , Óleos Voláteis/análise , Phaseolus/classificação , Syzygium/classificação , Fungos/classificação , Fabaceae/classificação
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